ExTexT2D exome chip analysis

Dataset

Download summary statistics

Note that the samples in the GoT2D exome chip analysis and FUSION exome chip analysis datasets are a subset of those included in the ExTexT2D exome chip analysis dataset. Cases in the EXTEND GWAS dataset are included in the ExTexT2D exome chip analysis dataset.

Publications

Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.
Mahajan A, et al.
Nat Genet 2018 Apr;50(4):559-571. doi: 10.1038/s41588-018-0084-1.

Dataset phenotypes

  • type 2 diabetes
  • type 2 diabetes adjusted for BMI

Dataset subjects

Cases Controls Cohort Ancestry
341 2,639 Age, Gene/Environment Susceptibility (AGES Reykjavik) Study European
679 2,596 Atherosclerosis Risk in Communities Study (ARIC) African American
950 9,900 Atherosclerosis Risk in Communities Study (ARIC) European
678 2,034 Bangladesh Risk of Acute Vascular Events study (BRAVE) South Asian
302 433 Cardiovascular Health Study (CHS) African American
969 2,476 Cardiovascular Health Study (CHS) European
1,505 4,515 CIHDS: Copenhagen Ischemic Heart Disease Study; CGPS: Copenhagen General Population Study (CIHDS/CGPS) European
5,802 7,896 Danish T2D case-control study by University of Copenhagen (DANISH-UCPH) European
198 2,174 Epidemiology for Health (EpiHealth) European
104 1,018 Erasmus Rucphen Family Study (ERF) European
882 1,506 Estonian Genome Center, University of Tartu (EGCUT) European
2,796 4,601 European Prospective Investigation into Cancer and Nutrition (InterAct) European
900 2,296 European Prospective Investigation into Cancer and Nutrition, Potsdam (EPIC-POTSDAM) European
1,406 1,494 Exeter Family Study of Childhood Health (EFSOCH) and Diabetes Alliance for Research in England (DARE) European
291 3,510 Family Heart Study (FamHS) European
4,529 10,546 FIN-D2D 2007; The Dose Responses to Exercise Training (DR's EXTRA) Study; National FINRISK 2007 Study; Finland-United States Investigation of NIDDM Genetics Study; and Metabolic Syndrome in Men Study (FUSION / Finrisk2007 / METSIM / DR’sEXTRA / D2D2007) European
987 7,043 Framingham Heart Study (FHS) European
960 957 Gene-Lifestyle Interactions and Complex Traits Involved in Elevated Disease Risk (GLACIER) European
438 8,255 Generation Scotland: Scottish Family Health Study (GS:SFHS) European
422 391 Genetic Overlap between Metabolic and Psychiatric Disease; TEENs of Attica: Genes & Environment (GOMAP (cases); TEENAGE (controls)) European
838 824 Guizhou-Bijie Type 2 Diabetes Study (GBTDS) East Asian
281 824 Health Aging and Body Composition (HABC) African American
237 1,409 Health Aging and Body Composition (HABC) European
184 1,749 Initiative on Nephropathy, of relevance to public health, which is Chronic, possibly in its Initial stages, and carries a Potential risk of major clinical End-points (INCIPE) European
382 1,894 Jackson Heart Study (JHS) African American
954 2,774 Kooperative Gesundheitsforschung in der Region Augsburg (KORA) European
1,827 12,008 Korea Association Resource, Health Examinee Cohort, and Cardio Vascular Disease Association Study (KOGES) East Asian
203 695 Leipzig-adults European
128 1,536 London Life Sciences Prospective Population Study (LOLIPOP_Exome) South Asian
101 876 London Life Sciences Prospective Population Study (LOLIPOP_OmniEE) South Asian
5,404 4,633 MDC, ANDIS, and SDR (MDC/ANDIS) European
476 1,428 MOnica Risk, Genetics, Archiving and Monograph (MORGAM) European
1,159 2,652 MT. SINAI BioMe Biobank Platform (BioMe) African American
367 2,029 MT. SINAI BioMe Biobank Platform (BioMe) European
1,639 3,194 MT. SINAI BioMe Biobank Platform (BioMe) Hispanic
284 1,374 Multi-Ethnic Study of Atherosclerosis (MESA) African American
102 668 Multi-Ethnic Study of Atherosclerosis (MESA) East Asian
151 2,356 Multi-Ethnic Study of Atherosclerosis (MESA) European
256 1,184 Multi-Ethnic Study of Atherosclerosis (MESA) Hispanic
407 1,870 Nutrition and Health of Aging Population in China (NHAPC) East Asian
2,910 4,596 PPP and DIREVA European
229 1,833 Prospective Investigation of the Vasculature in Uppsala Seniors (PIVUS) / Uppsala Longitudinal Study of Adult Men (ULSAM) European
163 489 Prospective Study of Pravastatin in the Elderly at Risk clinical trial (PROSPER) European
236 1,520 Rotterdam Study (RS) European
335 2,112 Singapore Chinese Eye Study (CHES) East Asian
109 877 SORBS European
806 1,261 Taiwan USA Diabetes Retinopathy/Chinese American Eye Study (TUDR/CHES) East Asian
622 5,471 The Netherlands Epidemiology of Obesity Study (NEO) European
7,154 14,669 The Pakistan Risk of Myocardial Infarction Study (PROMIS) South Asian
3,576 12,675 Wellcome Trust Case Control Consortium (UK Type 2 Diabetes Consortium); Young Diabetics Study (YDX); Oxford Biobank; TwinsUK; 1958 Birth Cohort (BC58) / Genetics of Diabetes and Audit Research Tayside Study (GoDARTS) European
1,766 20,298 Women's Genome Health Study (WGHS) European

Dataset subjects by ancestry

Cases Controls Ancestry
3,087 9,773 African American
4,315 18,743 East Asian
41,067 136,049 European
1,895 4,378 Hispanic
8,061 19,115 South Asian

Experiment summary

The ExTexT2D exome chip analysis dataset is a meta-analysis of T2D association summary statistics across five ancestries.

Dataset ID
ExChip_ExTexT2D