GoDarts exome chip analysis

Publications

Cohort Profile: Genetics of Diabetes Audit and Research in Tayside Scotland (GoDARTS).
Hébert HL, et al.
Int J Epidemiol. 2017 Sep 7. doi: 10.1093/ije/dyx140

Dataset phenotypes

  • adiponectin
  • BMI
  • cholesterol
  • urinary creatinine
  • diastolic blood pressure
  • eGFR-creat (serum creatinine)
  • fasting insulin
  • HbA1c
  • HDL cholesterol
  • height
  • LDL cholesterol
  • systolic blood pressure
  • triglycerides
  • type 2 diabetes
  • waist circumference
  • weight

Project

GoDARTS (Genetics of Diabetes Audit and Research Study in Tayside Scotland) recruits consented T2D patients and matching controls from the region of Tayside, Scotland. Electronic medical record information, including lab values, is available for these participants.

Experiment summary

The Illumina Exome array dataset contains 2,745 T2D subjects and 2,118 controls. Samples were genotyped using the Illumina Exome array. Phenotypes were normalised using inverse rank-based normalisation on the residuals of a linear model adjusting for age, sex, and 4 Principal Components. The top 10 Principal Components were used as covariates in this analysis.

Dataset ID
ExChip_GODARTS_EXOME