## General info Title: Summary statistics of Genome-Wide Association Study of Intracranial Aneurysms and Subarachnoid Hemorrhage Author: Mark K. Bakker Created: 2020/06/19 Genome build: GRCh37 Methods: SAIGE logistic mixed model Covariates: 20 PCs + sex For more details or data requests, please contact m.k.bakker-25@umcutrecht.nl or ij.m.ruigrok@umcutrecht.nl ## Files in the directory README.txt IA.GWAS.BakkerMK.2020.sumstats.Stage_1.txt.gz IA.GWAS.BakkerMK.2020.sumstats.Stage_2.txt.gz IA.GWAS.BakkerMK.2020.sumstats.SAH-only.txt.gz IA.GWAS.BakkerMK.2020.sumstats.uIA-only.txt.gz IA.GWAS.BakkerMK.2020.sumstats.EastAsianSubset.txt.gz IA.GWAS.BakkerMK.2020.sumstats.Stage_1_excludingUKBB.txt.gz IA.GWAS.BakkerMK.2020.sumstats.Stage_2_excludingUKBB.txt.gz IA.GWAS.BakkerMK.2020.sumstats.SAH-only_European_excludingUKBB.txt.gz IA.GWAS.BakkerMK.2020.sumstats.SAH-only_CrossAncestry_excludingUKBB.txt.gz -IA.GWAS.BakkerMK.2020.sumstats.Stage_1.txt.gz GWAS of IA (ruptured and unruptured) in European ancestry individuals -IA.GWAS.BakkerMK.2020.sumstats.Stage_2.txt.gz GWAS of IA (ruptured and unruptured) in European and East Asian ancestry individuals -IA.GWAS.BakkerMK.2020.sumstats.SAH-only.txt.gz GWAS of SAH-only individuals against controls in European-ancestry individuals. The cases are a subset of IA.GWAS.BakkerMK.2019.sumstats.Stage_1.txt.gz, the controls are the same -IA.GWAS.BakkerMK.2020.sumstats.uIA-only.txt.gz GWAS of unruptured IA-only individuals against controls in European-ancestry individuals. The cases are a subset of IA.GWAS.BakkerMK.2019.sumstats.Stage_1.txt.gz, the controls are the same -IA.GWAS.BakkerMK.2020.sumstats.SAH-vs-uIA.txt.gz GWAS of IA (ruptured and unruptured) in East Asian ancestry individuals. This is a meta-analysis of the BioBank Japan (BBJ) and China Kadoorie Biobank (CKB) cohorts -IA.GWAS.BakkerMK.2020.sumstats.Stage_1_excludingUKBB.txt.gz Stage 1 summary statistics, but excluding samples from the UK Biobank (stratum sUK2) -IA.GWAS.BakkerMK.2020.sumstats.Stage_2_excludingUKBB.txt.gz Stage 2 summary statistics, but excluding samples from the UK Biobank (stratum sUK2) -IA.GWAS.BakkerMK.2020.sumstats.SAH-only_European_excludingUKBB.txt.gz aSAH-only summary statistics in Europeans only, excluding samples from the UK Biobank -IA.GWAS.BakkerMK.2020.sumstats.SAH-only_CrossAncestry_excludingUKBB.txt.gz aSAH-only summary statistics of both European and East Asian ancestry, excluding samples from the UK Biobank ## Description of headers CHR: Chromosome of SNP BP: Basepair position of SNP in GRCh37 SNP: SNP identifier A_EFF: Effect allele A_NONEFF: Other (non-effect) allele Freq_EFF: Frequency of effect allele in the study population BETA: Beta (effect estimate) of A_EFF SE: Standard error of BETA P: P-value of the association test MAF: Minor allele frequeny. Calculated as: MAF=A_EFF if A_EFF<=0.5, MAF=1-A_EFF if A_EFF>0.5 A_MINOR: Minor allele. Does not have to be the effect allele Neff (or N): Effective sample size. Calculated as follows: 4*Ncases*Ncontrols / (Ncases+Ncontrols). Neff was calculated per stratum, and then per SNP summed over the strata with data on that SNP to reach a total Neff per SNP ## md5 sums a97f48d8e84f36b3a1866361890c0b52 IA.GWAS.BakkerMK.2020.sumstats.EastAsianSubset.txt.gz e3543e0465f573909aecff995fa44d95 IA.GWAS.BakkerMK.2020.sumstats.SAH-only.txt.gz 9f4f871f17d372ff8e838c1cb7367685 IA.GWAS.BakkerMK.2020.sumstats.Stage_1.txt.gz fedbfbe88db5189e4cabeefed310ad08 IA.GWAS.BakkerMK.2020.sumstats.Stage_2.txt.gz 621d775d8cf71611d6463582c232cb60 IA.GWAS.BakkerMK.2020.sumstats.uIA-only.txt.gz d4e1b1a40f91da1e354505a0ed988376 IA.GWAS.BakkerMK.2020.sumstats.Stage_1_excludingUKBB.txt.gz e9cdfe350b4230aa7faf6770a0947e42 IA.GWAS.BakkerMK.2020.sumstats.Stage_2_excludingUKBB.txt.gz d8b7a75f6bdd3af082f10764a70823c6 IA.GWAS.BakkerMK.2020.sumstats.SAH-only_European_excludingUKBB.txt.gz eae406906a0ebdc6b548e629781f043d IA.GWAS.BakkerMK.2020.sumstats.SAH-only_CrossAncestry_excludingUKBB.txt.gz